SEnsible Step-wise Analysis of DNA MEthylation BeadChips
SeSAMe documentation has moved.
SeSAMe now runs as a standalone C tool — IDAT → betas → QC → differential methylation → copy number, with visualization through cinderplot and no R required, its betas validated bit-identical to the R package. Start there for installation and the current workflow.
Archived HTML snapshots of the R package vignettes — no longer updated. For current R package documentation, see the Bioconductor package page.