Predict cell type annotation from the trained model
Usage
PredictCellType(bst_model, predictMatrix, smooth = FALSE, KNeighbor = 5)
Arguments
- bst_model
The boosting model trained from ModelTrain
- predictMatrix
A wide cell by pattern matrix generated from GenerateInput function
- smooth
A Boolean variable to indicate whether smooth the matrix (Default: FALSE)
- KNeighbor
number of knn neighbors to use for smoothing (Default: 5)
Value
A cell by cell type matrix with confidence score and labeled cell type.
