Usage: yame pairwise [options] <MU1.cx> (<MU2.cx>)
Return a format 6 set that represent differential methylation between MU1 and MU2.
If MU2 is not given, use the top 2 samples in MU1.cx.
Options:
-o output cx file name. if missing, output to stdout without index.
-H 1: higher meth level in sample 1 than 2 (default).
2: higher meth level in sample 2 than 1.
others: diff levels, i.e., 1 and 2 combined.
-c minimum coverage (default: 1)
-d minimum delta meth level/effect size (default: 0)
-h This help